You can download the 2008 command-line version of Fly Enhancer, Worm
Enhancer, and Plant Enhancer to run on your own computer. This updated
program uses Genome Enhancer 2.0 Beta to scan genomes at a rate that is
about 50x faster than the 2008 web version.
Genome Enhancer is in beta, with periodic new releases. The most
recent version is beta 2. See change log for details.